LinkML - Linked (Open) Data Modeling Language @linkml_data
A simple but expressive YAML-based data modeling language for effortlessly adding semantics to your data. https://t.co/vNvm6hotvh linkml.io Everywhere Joined July 2021-
Tweets41
-
Followers178
-
Following130
-
Likes147
The latest LinkML release, with added N-dimensional array support! github.com/linkml/linkml/…
You can now find us over on fosstodon.org/@linkml!
@coderwas Hi @coderwas, if you are still struggling with this issue, please submit an issue on our tracker: github.com/linkml/linkml/… - thanks!
@samwalrus @SierraMoxon @linkml_data @bioontologies The video of Sierra Moxon's ISCBacademy webinar (LinkML: an open data modeling framework, grounded with ontologies) is now up at youtube.com/watch?v=nyNp09… and the slides are at docs.google.com/presentation/d…
🙌Closer to bridging the gap between #biodiversity #omics data standards! 🆕Methods paper - part of the @Bicikl_H2020 collection - reports on building sustainable #interoperability between @tdwg's Darwin Core and MIxS. Find more: blog.pensoft.net/2023/10/04/adv… #GEOBONconf2023 #TDWG2023
The next LinkML Community meeting is tomorrow, Thursday, Sept 14 (the second Thursday of the month, rather than the usual third Thursday) at 8am PT / 11am ET / 15:00 UTC. Agenda: bit.ly/linkml-communi… Host: Chris Mungall Topic: Overview of the milestones and onboarding process
If you’re curious about how LinkML can help you create better, FAIRer, more reusable data models using ontologies, please check out our new article in the OBOOK: oboacademy.github.io/obook/lesson/l…
Please join our new #LinkML group on LinkedIn! linkedin.com/groups/1430324…
@richdijkstra @oeg_upm @mijaspao @kvistgaard @linkml_data Take (thread) I think it is necessary to have #typelevel (schema) #datalineage across tech, languages, ML workflows ("data pipelines") + bring closer #dataengineering and #datagovernance in order to realize #ResponsibleAI And #LinkML is uniquely suited
@sspaeti A #SemanticLayer needs a data schema language that can 1. subsume existing schema languages: json, avro, etc 2. abstract over data formats (delay conversions) 3. use a generative approach towards existing schema dialects, #GPL-s & frameworks linkml.io/linkml/faq/why… #SmartData
LinkML github.com/linkml is a great eco-system. Did some experimenting with multiple data model paradigms and dito data serialisations with the same semantics. LinkML is built with itself! @oeg_upm @semanticbeeng @mijaspao @kvistgaard @linkml_data What do you think?
@sspaeti A #SemanticLayer needs a data schema language that can 1. subsume existing schema languages: json, avro, etc 2. abstract over data formats (delay conversions) 3. use a generative approach towards existing schema dialects, #GPL-s & frameworks linkml.io/linkml/faq/why… #SmartData
@linkedktk @semanticarts @AndrewYNg "Data is self-describing and does not rely on an application for interpretation and meaning." With @linkml_data we can have data stay in efficient data formats and "eat the semantic cake too" (on demand; keen conversion to RDF makes silos) #SmartData
@sspaeti A #SemanticLayer needs a data schema language that can 1. subsume existing schema languages: json, avro, etc 2. abstract over data formats (delay conversions) 3. use a generative approach towards existing schema dialects, #GPL-s & frameworks linkml.io/linkml/faq/why… #SmartData
We added a howto guide to the @linkml_data docs on generating AI prompts from LinkML schemas. linkml.io/linkml/howtos/…, making use of the new feature in the @OpenAI API to structure results as JSON platform.openai.com/docs/guides/gp… 🧵
The next #LinkML community meeting is on June 15 at 11am ET. James Overton will present Nanobot (web UI) + VALVE (table/database/validation layer). Agenda: bit.ly/linkml-communi…
github.com/monarch-initia… will be of interest to folks using RDF who aren’t allergic to LLMs
The OntoGPT framework and SPIRES tool by @chrismungall 's team provide a principled approach to extract knowledge graph from unstructured text using GPT. Here is my impression. apex974.com/articles/ontog…
Great article on applying the LinkML-powered #OntoGPT framework!
The OntoGPT framework and SPIRES tool by @chrismungall 's team provide a principled approach to extract knowledge graph from unstructured text using GPT. Here is my impression. apex974.com/articles/ontog…
@sodadata @soda #LinkML and #SodaCL could be combined to specify #DataContract-s with a semantic layer, in a technology agnostic way 🤔 linkml.io/linkml/intro/o…… docs.soda.io/soda-cl/metric…… cc cc @linkml_data @Onehousehq @datahubproject #SmartData
The @MonarchInit Biolink Model Brings Data Together! Find out more about our top 3 most downloaded papers in 2022 from the journal ASCPT here: ascpt.org/Journals/CTS/T… #BiolinkModel #TeamScience #Collaboration #RareDisease #DrugRepurposing #TranslationalScience @linkml_data
LinkML community meeting on May 18 at 11am ET! Please join us to hear about schema-driven data collection tools like CEDAR (John Graybeal, @jgmetadata) & DataHarmonizer (Damion Dooley, @synapticlove). Agenda: bit.ly/linkml-communi… #LinkML #TeamScience #Collaboration #DataModel
Have a LinkML feature request? Interested in tutorials? Eager to share your LinkML model or use case with the community? Join our next monthly community meeting on April 20 at 11am ET. Subscribe to groups.google.com/g/linkml-commu… for meeting info! #LinkML #TeamScience #DataModel
🐛 @goya260
12 Followers 247 Following
ikedi @IkediozobuIkedi
2 Followers 37 Following Without data, you’re just another person with an opinion.
BJ Sanford @bjsanford
31 Followers 316 Following DC Bank & FinTech Lawyer | Building Artisanal RegTech | Claude is my Co-Pilot
Burkhard Noltensmeier @BurkhardNolten1
11 Followers 430 Following
Copy Paest 🌴 @kohwi
1K Followers 2K Following semantics, scientific data standards, open-system carbon removal. Currently SBG at UC Davis (@SBGUCDavis). Formerly Product & Engineering at @regen_network
Scott Anthony Rountre... @RountreeSc52771
9 Followers 944 Following
Amina Bergnaum @AminaBergnaum
2 Followers 33 Following "Rising star in the modeling industry with a love for storytelling through imagery. Whether it's conveying emotion in a portrait or embodying a character
dank_atz @DanK_atz
194 Followers 549 Following NWEA research - measurement and ontology engineering. Bikes, otherwise.
Praneeth Devunuri @praneethDevunu1
87 Followers 354 Following PhD Student (Transportation)- UIUC | Ex - IITM, TAMU | Dreamer and Tech Enthusiast.
Utz Ermel @ErmelUtz
63 Followers 69 Following Interested in cryoEM methods development and transcription.
五五开 @wwki23343
0 Followers 74 Following
S. pombe model organi... @PomBase
1K Followers 346 Following Comprehensive database for the fission yeast S. pombe, providing structural and functional annotation and literature curation. Funded by the @wellcometrust.
Colbie Reed, PhD @mindandmattr
425 Followers 916 Following Biocuration 🔎 Bioinformatics 🧬 Biomedical Ontologies @MedicalCollege PD Fellow Complex systems are my jam 🎸🎧🎶 Anime★Manga★Nerdcore also on 🦋
Nallasivan @Shiva_K_
5 Followers 89 Following
Ebrahim Norouzi @ebi_norouzi
99 Followers 261 Following I’m a PhD student in Information Service Engineering group at FIZ Karlsruhe interested in Semantic Web, Ontology, KG, ODPs and Materials Informatics.
Tufan Kerse 🇹🇷 @Tufankerse
1K Followers 144 Following +9 Years SEO Experience | Semantic Seo | SEO Content Writer | Web Developer |
Madeline @GaleOrland66461
18 Followers 259 Following I want to feel safe in a relationship with someone I like.
Ljubo @__hashihashi
19 Followers 631 Following
Peter Midford @pmidford
406 Followers 639 Following Informatics for behavior and phylogenetics. He/him.
Jiaoyan Chen @ChenJiaoyan1
472 Followers 611 Following Senior Lecturer (Associate Professor) at @csmcr. Interested in #KnowledgeGraph, #Ontology, Knowledge Representation and Machine Learning.
Denis O'Meally @DenisOMeally
176 Followers 1K Following
Sean Jungbluth @seanjungbluth
669 Followers 1K Following Oceanographer turned founder. I study life at a planetary scale and build the AI tools to do it faster. Founder, CEO/CTO @BioKEAAI. PI @EOS_Center.
Matthew O’Meara @momeara
778 Followers 3K Following Assistant professor at UMich with a focus on computational pharmacology. (he/him)
Sumir @sumirhp
14 Followers 152 Following
CEDAR @metadatacenter
225 Followers 140 Following Center for Expanded Data Annotation and Retrieval: A cheaper+faster+better way to do metadata!
lltommy @reasoning_tommy
122 Followers 221 Following Previously @emblebi, keeper of the RDF platform, contributor to OLS, OXO et al. Now works as independent consultant, still pushing the agenda though
Charles Vardeman @CharlesVardeman
862 Followers 5K Following Research Assistant Professor, Center for Research Computing, University of Notre Dame. Computational Scientist. Chemist. Ontologies and Ontology Design Patterns
parag @paggys1979
41 Followers 2K Following
@[email protected]... @timathom
585 Followers 592 Following Describing resources, meting data, defying augury. Tweeting from my inner standing point, wherever that may be. Ingl(é|ê)s, portu(ñ|nh)ol. He, him
Juan Antonio Esteban @juan_esteban
593 Followers 2K Following Ingeniero de Teleco. I+D+i. Ciberseguridad, Privacidad y Gobernanza de datos.
Ryan Ly @reallyryanly
280 Followers 619 Following Neuroscientist, software engineer, ice cream enthusiast. Core developer of Neurodata Without Borders (https://t.co/o8G7ENLFuF). he/him Also @ryanly.bsky.social
Dr. Sara El-Gebali �... @yalahowy
965 Followers 1K Following Research data manager - Founder of @OpenCider & @FAIR_Points Scientist, Intersectional Feminist, LGBTQ+, She/Her, 🇸🇪 & 🇪🇬 Personal account = personal views
FAIRPoints 🐘Mastod... @FAIR_Points
260 Followers 105 Following An event series bringing together people across the research eco-system to discuss, highlight and share pragmatic solution to making #FAIR a reality.
Salonbus @SilentScreamiao
37 Followers 1K Following
MR/ BTC @ahmedel48582763
7 Followers 224 Following
MD ALAMIN @Anamul556
640 Followers 5K Following Hi, This is Freelancer Alamin. I'm an SEO Expert and Web Analytics Specialist. WhatsApp No: +8801846909184. #seoexpert #seoservice #Digitalmarketing
zzzzzzoo00oo @zzzzzzoo00oo
253 Followers 7K Following
Milton Pividori @miltondp
469 Followers 351 Following Assistant Professor in Biomedical Informatics at @CUBiomedInfo | Machine learning, bioinformatics, and genetic medicine. https://t.co/u4T8kKsC37
Colbie Reed, PhD @mindandmattr
425 Followers 916 Following Biocuration 🔎 Bioinformatics 🧬 Biomedical Ontologies @MedicalCollege PD Fellow Complex systems are my jam 🎸🎧🎶 Anime★Manga★Nerdcore also on 🦋
Ernesto Jimenez-Ruiz @ejimenez_ruiz
902 Followers 757 Following Senior Lecturer in #AI @CityUniLondon @NeSy_City #KnowledgeGraphs Past: @UJIuniversitat @emblebi @CompSciOxford @SiriusSfi @turinginst @samsungresearch
BDJournal @BioDataJournal
3K Followers 262 Following Accelerates biodiversity data publication & dissemination. The 1st to offer integrated narrative & data within an article! Powered by @Pensoft & @ARPHAplatform
Antarctic Biodiversit... @BiodiversityAQ
281 Followers 102 Following The Antarctic Biodiversity portal is the regional node of OBIS and GBIF. We encourage and support the publication of Antarctic biodiversity data.
Ryan T. Scott @RyanTScott
4K Followers 5K Following Discovering the biology humans need to explore and thrive beyond Earth via Data × Open Science × Health × AI/ML 🚀🌘🇺🇸 and I ❤️ Rugby
KSE @semanticbeeng
782 Followers 765 Following Shipping/bridging Engineering ⇆ Science #SoftwareArchitecture #FunctionalProgramming #MachineLearning #BigData #MachineLearningEngineering #CompilerDesign
cell_ontology @CellOntology
26 Followers 69 Following All about the Cell Ontology - https://t.co/oaBoBW6zig
Sam Neaves @samwalrus
153 Followers 847 Following
FAIRplus @FAIRplus_eu
929 Followers 628 Following @IHIEurope project to improve data management and data governance in European health research. Coordinated by @ELIXIREurope and @JanssenGlobal
LOV @LOVocabularies
1K Followers 537 Following The growing ecosystem of Linked Open Vocabularies (RDFS or OWL ontologies) used in the Linked Data Cloud
Iddo Friedberg 💔�... @iddux
4K Followers 2K Following Now at https://t.co/WVNf5mwt0e Curses back at dimensionality. High throughput, some output. Data Fertilizer. Marathoner. Typos. Unfunny.
Evidence and Conclusi... @ecoontology
113 Followers 100 Following Biological ontology || Evidence & assertion types || Add context to biological database entries || Open source || Collaborative || On GitHub evidenceontology
Clement Jonquet @jonquet_lirmm
486 Followers 425 Following PhD in Informatics, Senior Researcher (MISTEA) & Associate Researcher (LIRMM), former Stanford visiting scholar (ontologies, annotation, semantic web)
@OntoCommons @ontocommons
713 Followers 537 Following #OntoCommons is an @EU_H2020 project delivering a #FAIR #interoperable #standardised #ontology #datadocumentation for faster & trustworthy #datasharing
FAIRlady @SusannaASansone
3K Followers 880 Following Academic Lead #ResearchPractice @UniofOxford; Prof @oxengsci; Director @OxfordeResearch; #FAIRprinciples author; @FAIRsharing_org @isatools #FAIRcookbook colead
DBpedia🇺🇦 @dbpedia
5K Followers 4K Following Global & Unified Access to Knowledge Graphs. Public Data Infrastructure for a Large, Multilingual, Semantic Knowledge Graph https://t.co/uMZLxiWtT6
Tobias Kuhn (@tkuhn@m... @txkuhn
1K Followers 1K Following
AlejandraGonzalezBelt... @alegonbel
1K Followers 5K Following Head of Data @UKAEAOfficial, @softwaresaved fellow; W3C DCAT editor; views my own; https://t.co/yyVdIAkqcL
Pete @Drosophilic
1K Followers 2K Following #FAIR, #metadata, #biocuration, #ontologies, #InfoArchitecture #OpenScience Formerly @flybasedotorg, @FAIRsharing_org, now industry. NO LONGER ACTIVE ON HERE
Catia Pesquita @CPesquita
633 Followers 376 Following Professor @DIemCiencias. Senior researcher in SW and Bioinformatics @lasige. Views my own.
Andrew Su @andrewsu
3K Followers 2K Following Professor @scrippsresearch studying bioinformatics, genetics, and genomics (he/him) #blacklivesmatter Parked at @[email protected]
⚛ AtomGraph @atomgraphhq
2K Followers 3K Following We build #KnowledgeGraph management solutions and lead the way to data-driven Web applications. LinkedDataHub: https://t.co/pGlS0zCpEu
Janna Hastings 🏳�... @JannaHastings
669 Followers 640 Following Head of Human-Centered Health AI Group at Idiap Research Institute. Also @jannahastings.bsky.social
Obi Griffith, PhD @obigriffith
2K Followers 1K Following Professor at WashU School of Medicine and Genome Institute researching the causes and treatments of cancer with NGS and bioinformatics (https://t.co/q8clL4V0C2)
Henriette Harmse @HarmseHenriette
199 Followers 239 Following Linked Data and Semantic Technologies enthusiast
Robert Hoehndorf @leechuck
532 Followers 555 Following
Emma Griffiths @griffiemma
595 Followers 650 Following Biochemist, microbiologist, helping to develop ontologies for genomic epidemiology in Canada. Something something... Science... something something...Dark side.
Peter Midford @pmidford
406 Followers 639 Following Informatics for behavior and phylogenetics. He/him.
Dr. Sara El-Gebali �... @yalahowy
965 Followers 1K Following Research data manager - Founder of @OpenCider & @FAIR_Points Scientist, Intersectional Feminist, LGBTQ+, She/Her, 🇸🇪 & 🇪🇬 Personal account = personal views
Alexander (Sasha) Wai... @wait_sasha
2K Followers 6K Following Democracy—AI—medicine—exascale data—freeknowledge. Just chill'n in Elon's Nazi bar. Make good trouble while you still can. Link for alt perspective. They/Them
Lucy 🇪🇺🇧🇪 @LucyWlh
118 Followers 770 Following Terminologist | Publications Office of the European Union
Josh Moore @notjustmoore
921 Followers 2K Following #RSEng for @GerBI_GMB and TA1 lead for @NFDI4BIOIMAGE. OSS maintainer for @openmicroscopy & @zarr_dev. @[email protected] https://t.co/s2Y0a2n5Kc
Jerven Bolleman @jervenbolleman
592 Followers 513 Following @[email protected] Developer sparql & https://t.co/bAMEzo5jH3
Bob DuCharme @bobdc
3K Followers 166 Following Senior Technical Writer at Graphwise (opinions mine, not theirs). Wrote O'Reilly's "Learning SPARQL." Follows you. Mastodon: https://t.co/dF1rZ2QqgT
J. Harry Caufield @harry_caufield
265 Followers 1K Following I do biomedical data mining, knowledge graph construction and ontology development. I like bots, too. he/him mastodon: https://t.co/k8SOaDaQ3W
Varsha Khodiyar, Ph.D @varsha_khodiyar
1K Followers 998 Following Creating data lakes, avoiding data swamps #FAIRdata #datasharing #metadata Formerly @HDR_UK @SpringerNature @ScientificData @F1000Research @news4go @genenames
Percona Community @PerconaBytes
7K Followers 4K Following Databases are hard. We make them faster. ⚡ Deep dives on optimization, open source advocacy, and expert peer support. Stay portable: https://t.co/2oh0b9IvrS
Sierra Moxon @SierraMoxon
20 Followers 44 Following Staff Software Developer at LBNL Mastodon: https://t.co/EzUt0or95k
The Solid Project @project_solid
3K Followers 0 Following #Solid –Your data, your choice. Follow us on Reddit: r/Solid. For support, email us at [email protected].
Jose E. Labra Gayo @jelabra
471 Followers 555 Following Professor at University of Oviedo @[email protected]
Brad Chapman @chapmanb
3K Followers 593 Following Biologist and programmer @chapmanb.bsky.social @[email protected]
Sarah Hunter @sezzy_boy
307 Followers 731 Following Work in @NHS on genomics informatics; previously @illumina and @emblebi. Mum of dude and dudette. Northerner but now in the South.
Philippe Rocca-Serra @Phil_at_OeRC
400 Followers 448 Following
RDA Europe @RDA_Europe
6K Followers 534 Following The European plug-in to the Research Data Alliance: building the social and technical bridges that enable global open sharing of data @resdatall
LJGC @lj_garcia
161 Followers 310 Following
Andrea Splendiani @AndSplend
322 Followers 154 Following Semantic Web, Open Data and Bioinformatics.(or electro music and burning man).
John Kunze @jakkbl
402 Followers 675 Following mastodon: @[email protected] Computer scientist with libraries, museums, archives, and data centers. Work: data, metadata, identifiers.Trends for United States
You might like
